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Note that the [https://docs.alliancecan.ca Alliance wiki] also contains extensiv

...h as [[STAR-CCM+]]. This stack is available by loading the CCEnv module. Note that in most cases you will still need to purchase a license to use this so

Note: The compilation of a matlab code produces two files, e.g., compiling <tt>m Here is an example script which uses the MCR. Note that the "run_myscript.sh" script is produced by the MATLAB compiler, toget

# Note that the module will likely be taken out of experimental mode at some point

Note that GROMACS is well-suited to use on GPUs, of which Niagara has none. Run

Note that this file is only using a single core. You must use all 40 cores whic

Note that in the table, optional arguments are denoted with square brackets (i.e

Note that most users will debug on the login nodes of the a clusters (nia-login0 Note that on compute nodes, $HOME is read-only, so unless your code is on $SCRAT

Note that when using the ramdisk: #Note:

...as PATH and LD_LIBRARY_PATH in order to use different installed programs. Note that the simple fact of loading a module doesn't execute the software in qu Note: the <code>*Env</code> modules are '''''sticky'''''; remove them by <code>-

Note that you must specify the Python version that you want. This will create a

# Note that the module will likely be taken out of experimental mode at some point

NOTE: gnu tar has gone away from the standard and can use larger file names, wit

NOTE: Be sure to use "-q64" when using the IBM compilers. Note: To use the full C++ bindings of MPI (those in the MPI namespace) in c++ co

...quest an interactive job from the regular queue using the salloc command. Note, however, that this may take some time to run, since it will be part of the ...uts the job in the queue. It will run on the compute nodes in due course. Note that you must submit your job from a login node. You cannot submit jobs fr

d. Note that the evaluation of $? must be done on the very next command after tar. then inspect TRASH and remove it manually. Note that the above command could possibly be costly if you make a mistake since

<li> take note of the node where you are logged to, ie. the head node, let's say <code>nia

Note that there is a single Anaconda R module available, and that none of these ...to make sure that R knows where to look for the packages you've compiled. Note that you must install packages with logged into a development node as write

Note that Niagara compute nodes have no local disks, so <tt>$SLURM_TMPDIR</tt> l

...full precision, so that your run can continue exactly where it left off. Note that this may differ from typical outputs which may not need to be in full

{{Note|SSH keys are now the only way to authenticate to most SciNet systems, and p '''<big>***Note***</big>''' if you chose a custom SSH key name, <i>i.e.</i> something other

Niagara, Mist and Rouge accesses several different file systems. Note that not all of these file systems are available to all users. ...project file system and using it as scratch will be flagged and contacted. Note that on niagara /project is only available to groups with RAC allocation.

Note: For multiple node usage, it makes sense to have to load the IntelMPI modul Note: currently, the uniformized mode doesn't explicitly utilize optimization op

Note that ish is not intended to be able to change your existing (tar) files. Th Note that the count is cumulative, i.e. files in subdirectories are

* Note that the mpifun flag "--ppn" (processors per node) is ignored. Slurm takes ...der your group's RAS allocation (previously called `default' allocation). Note that groups with an allocation cannot run under a default allocation.

Note: this works with virtual environments that are created from the python modu

Note that the default CC StdEnv changed since Apr/01/2021.

* NOTE: do not transfer SMALL FILES with HSI. Use HTAR instead * NOTE: the VFS based /archive mount point is not visible on the archive02 node wi

Note: Documentation about the "GPU expansion to Niagara" called "Mist" can be fo NOTE: home is read-only on compute nodes.

'''Note''': Starting on Jan/22/2021 we are transitioning to oauth for authenticatio

# NOTE: when using --env-all there is a limit of 8192 characters that can be passe # NOTE: when using --env-all there is a limit of 8192 characters that can passed t

NOTE: home is read-only on compute nodes. NOTE: Currently archive space is available only via [[HPSS]].

...of ~4GB -- then it's allowed to just run fewer jobs so that they do fit. Note that in that case, the jobs are likely candidates for parallelization, and There are four important things to take note of here. First, the <tt>'''wait'''</tt>

Note that the use of conda is highly [[Python | discouraged on Niagara]].

Note that it is highly recommended that you use the NiaEnv/2019b stack by loadin Make sure you note down (a) the name is of the compute node that you got allocated (the salloc

Note that there are 2 kinds of accounts active on the teach cluster: personal ac Note: It turns out that for many computers, in particular for Macs, this ssh com

Note: To learn how to setup ssh keys for logging in please see [[SSH#SSH Keys|SS Note that a <tt>module load</tt> command ''only'' sets the environment variables

...data, and submit jobs, but these jobs will not run until after the event. Note that the debugjob queue will remain available to everyone as well. ...EST:</b> File system issues on Teach fixed and Teach is accessible again. Note that the file system of Teach is not very good at handling many remote vsco

'''<span style="background:#fc8383">Important note:</span>''' the majority of computer systems as of 2021 (laptops, desktops, *Note: By default, conda environments are located in '''$HOME/.conda/envs'''. Cac

Note that your password should never, never, never be to sent to us, even if you ...o [https://portal.scinet.utoronto.ca/password_resets Password reset page]. Note that SciNet accounts are only necessary for non-Alliance resources, such as

It's important to note here that scaling tests should be done on realistic problem sizes and for r (Note that this isn't a very good way of calculating pi!). On exit, this program

*Note: By default, conda environments are located in '''$HOME/.conda/envs'''. Dow ...d by a 2-node GROMACS-2019 job which has 5 MPI ranks running on each GPU. (Note: the 0 MiB process is from NVML)